Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013027.1 Corchorus olitorius cultivar O-4 contig13060, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30426

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3971--4002
6
5.3
6
100
0
64
50
34
0
15
1.45
4032--4167
38
3.6
38
83
2
175
25
33
17
23
1.96
4282--4325
22
2.0
22
82
8
54
52
15
2
29
1.55
4493--4539
10
4.8
10
78
2
51
23
2
42
31
1.66
4493--4538
20
2.3
20
92
3
76
23
2
43
30
1.66
6417--6492
27
2.9
27
90
2
118
38
23
21
17
1.93
6997--7034
18
2.1
19
90
5
60
31
10
39
18
1.85
9932--9994
30
2.1
30
88
5
92
25
17
39
17
1.91
10038--10075
18
2.1
19
90
5
60
28
13
39
18
1.88
11259--11294
17
2.2
17
95
5
65
0
11
5
83
0.80
12757--12866
31
3.6
31
79
7
118
40
13
14
30
1.85
14984--15211
37
6.2
37
84
9
297
35
16
17
30
1.92
14982--15194
70
2.9
73
86
5
281
36
16
16
30
1.91
14984--15211
107
2.1
112
87
6
333
35
16
17
30
1.92
27456--27485
15
2.1
15
93
6
53
63
6
16
13
1.50
27964--28054
42
2.2
42
85
0
119
12
23
48
16
1.79
30325--30404
27
3.0
27
84
10
87
41
15
8
35
1.78
30308--30405
25
4.0
26
71
25
88
39
13
8
38
1.74
30309--30426
47
2.5
45
80
6
110
38
12
8
40
1.74
30308--30426
25
5.0
24
69
25
83
37
13
8
40
1.75

Tables:   1

The End!