Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013029.1 Corchorus olitorius cultivar O-4 contig13062, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1812
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29


Found at i:1119 original size:16 final size:17

Alignment explanation


    Indices: 1090--1127  Score: 51
    Period size: 16  Copynumber: 2.3  Consensus size: 17

       1080 AAAAATAAAC

                             
       1090 AAAAATAAAAGAAAAAG
          1 AAAAATAAAAGAAAAAG

                     *      *
       1107 AAAAAT-AATGAAAAAT
          1 AAAAATAAAAGAAAAAG

                 
       1123 AAAAA
          1 AAAAA

       1128 GATAAGGGTA


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  16   13  0.68
  17    6  0.32

ACGTcount: A:0.82, C:0.00, G:0.08, T:0.11


Consensus pattern (17 bp):   
AAAAATAAAAGAAAAAG
Done.