Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001303.1 Corchorus olitorius cultivar O-4 contig01303, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2670
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.33


Found at i:894 original size:12 final size:13

Alignment explanation


    Indices: 877--912  Score: 65
    Period size: 12  Copynumber: 2.8  Consensus size: 13

        867 CATTGATACC

                         
        877 TCGATATATCCG-
          1 TCGATATATCCGT

                         
        889 TCGATATATCCGT
          1 TCGATATATCCGT

                       
        902 TCGATATATCC
          1 TCGATATATCC

        913 ATGGATATCT


Statistics
Matches: 23,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  12   12  0.52
  13   11  0.48

ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36


Consensus pattern (13 bp):   
TCGATATATCCGT

Found at i:919 original size:12 final size:12

Alignment explanation


    Indices: 877--920  Score: 52
    Period size: 12  Copynumber: 3.6  Consensus size: 12

        867 CATTGATACC

                       *
        877 TCGATATATCCG
          1 TCGATATATCCA

                        *
        889 TCGATATATCCGT
          1 TCGATATATCC-A

                        
        902 TCGATATATCCA
          1 TCGATATATCCA

             *     
        914 TGGATAT
          1 TCGATAT

        921 CTGTATTAAA


Statistics
Matches: 28,  Mismatches: 3, Indels: 2
        0.85            0.09        0.06

Matches are distributed among these distances:
  12   17  0.61
  13   11  0.39

ACGTcount: A:0.27, C:0.20, G:0.16, T:0.36


Consensus pattern (12 bp):   
TCGATATATCCA
Done.