Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013031.1 Corchorus olitorius cultivar O-4 contig13064, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2912
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.32


Found at i:1097 original size:18 final size:18

Alignment explanation


    Indices: 1074--1110  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1064 ATTACTAATA

                  *     *     
       1074 TTATTTTATTTTTTTCCT
          1 TTATTTCATTTTCTTCCT

                              
       1092 TTATTTCATTTTCTTCCT
          1 TTATTTCATTTTCTTCCT

             
       1110 T
          1 T

       1111 ATCCGGTTTT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.11, C:0.16, G:0.00, T:0.73


Consensus pattern (18 bp):   
TTATTTCATTTTCTTCCT

Found at i:1652 original size:12 final size:12

Alignment explanation


    Indices: 1635--1670  Score: 63
    Period size: 12  Copynumber: 3.0  Consensus size: 12

       1625 TGCTTCAACC

                        
       1635 TCCAAGATAAAT
          1 TCCAAGATAAAT

                        
       1647 TCCAAGATAAAT
          1 TCCAAGATAAAT

                  *     
       1659 TCCAAGTTAAAT
          1 TCCAAGATAAAT

       1671 ATCCCATCAA


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  12   23  1.00

ACGTcount: A:0.47, C:0.17, G:0.08, T:0.28


Consensus pattern (12 bp):   
TCCAAGATAAAT
Done.