Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013032.1 Corchorus olitorius cultivar O-4 contig13065, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29627

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2392--2577
92
2.0
92
90
0
291
37
14
5
42
1.69
2593--2737
72
2.0
72
97
0
272
42
16
9
31
1.80
2710--2873
82
2.0
82
98
0
319
51
9
12
25
1.70
7178--7218
21
1.9
22
85
5
57
9
17
29
43
1.80
7458--7511
21
2.6
21
83
13
67
55
0
1
42
1.10
11973--12006
11
3.1
11
86
0
50
26
5
14
52
1.64
15670--15754
43
2.0
43
95
0
152
44
5
10
38
1.63
20929--20996
26
2.5
26
83
4
82
47
4
5
42
1.48
21034--21058
13
1.9
13
100
0
50
44
0
0
56
0.99
21254--21317
21
3.2
21
68
28
66
42
10
3
43
1.55
21260--21321
19
3.2
19
68
28
58
40
12
3
43
1.59
21238--21321
39
2.2
39
100
0
168
39
13
2
45
1.56
21456--21496
3
13.7
3
100
0
82
65
0
0
34
0.93
22555--22591
18
2.0
19
89
5
58
59
2
5
32
1.34
23450--23487
19
2.0
19
100
0
76
36
5
21
36
1.76
24744--24782
2
19.5
2
100
0
78
51
0
0
48
1.00
25751--25890
72
1.9
72
94
2
246
32
17
9
40
1.82
26912--26946
13
2.8
12
91
8
61
40
8
0
51
1.33

Tables:   1

The End!