Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013036.1 Corchorus olitorius cultivar O-4 contig13069, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  161580

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11973--11999
14
1.9
14
100
0
54
40
14
7
37
1.74
13069--13146
41
1.9
41
89
7
124
38
14
16
30
1.88
13181--13351
40
4.4
37
87
8
234
33
14
16
35
1.90
14094--14164
17
4.1
17
75
10
63
60
16
5
16
1.54
14069--14163
35
2.6
35
79
9
102
61
17
5
15
1.52
22809--22839
9
3.4
9
100
0
62
45
22
9
22
1.81
26559--26584
11
2.4
11
100
0
52
69
7
15
7
1.35
28997--29168
93
1.8
93
94
0
308
51
1
12
34
1.47
30112--30160
16
3.1
16
72
16
57
30
2
8
59
1.38
30690--30736
6
7.5
6
88
7
67
51
0
14
34
1.43
35534--35752
114
1.9
114
91
1
359
31
13
31
24
1.93
49937--50176
114
2.1
115
92
2
403
32
12
29
25
1.93
55787--56248
235
2.0
235
93
0
789
35
14
12
38
1.83
60571--60613
23
1.9
22
90
4
68
46
4
6
41
1.51
60579--60621
21
2.0
23
86
9
63
48
6
6
37
1.57
62877--63111
100
2.3
101
83
5
278
43
9
11
35
1.74
63986--64046
31
2.0
31
86
0
86
27
16
16
39
1.90
65800--65833
16
2.1
16
88
5
50
55
8
0
35
1.31
66526--66561
18
2.0
18
94
0
63
25
5
22
47
1.73
94957--95000
22
2.0
23
86
13
65
61
9
0
29
1.27
96195--96302
53
2.0
53
94
0
189
40
7
10
41
1.67
109009--109071
33
1.9
33
96
0
117
50
19
11
19
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110023--110050
2
14.0
2
100
0
56
50
0
0
50
1.00
115231--115258
2
14.0
2
100
0
56
50
0
50
0
1.00
117516--117543
6
4.7
6
100
0
56
67
0
14
17
1.22
117516--117551
18
2.0
18
88
0
54
72
0
13
13
1.13
124914--124970
29
1.9
30
82
3
71
42
22
7
28
1.80
141858--141889
15
2.0
17
88
11
50
9
21
0
68
1.17
143006--143109
22
4.8
22
81
7
115
39
9
9
41
1.71
143007--143109
43
2.4
44
85
4
129
39
9
9
40
1.71
143007--143131
65
1.9
64
80
9
146
41
10
8
40
1.69
144099--144165
35
1.9
35
84
0
89
37
32
4
25
1.76
146596--146678
22
3.8
21
73
17
64
57
1
2
38
1.19
146598--146646
25
2.0
25
84
8
64
59
0
0
40
0.98
147354--147408
24
2.3
24
96
0
101
49
3
5
41
1.43
149938--150013
30
2.5
31
86
2
100
34
17
7
40
1.78
150928--150977
25
2.0
25
100
0
100
40
12
40
8
1.72
151127--151175
22
2.2
22
82
7
55
8
22
4
65
1.37
151386--151459
29
2.5
31
91
4
116
44
12
18
24
1.84
158830--159473
331
1.9
322
79
12
691
38
7
13
40
1.73
161548--161580
2
16.5
2
100
0
66
48
0
0
51
1.00

Tables:   1

The End!