Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013038.1 Corchorus olitorius cultivar O-4 contig13071, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2561
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.31


Found at i:2358 original size:27 final size:27

Alignment explanation


    Indices: 2320--2444  Score: 191
    Period size: 27  Copynumber: 4.6  Consensus size: 27

       2310 CAAAATCGAG

                             *         
       2320 GGGCATTTTAGTCATTTTCACATTCAA
          1 GGGCATTTTAGTCATTTGCACATTCAA

                                       
       2347 GGGCATTTTAGTCATTTGCACATTC-A
          1 GGGCATTTTAGTCATTTGCACATTCAA

                                       *
       2373 GGAGCATTTTAGTCATTTGCACATTCAG
          1 GG-GCATTTTAGTCATTTGCACATTCAA

                                       
       2401 GGGCATTTTAGTCATTTGCACATTC-A
          1 GGGCATTTTAGTCATTTGCACATTCAA

                      *       
       2427 GGGACATTTTGGTCATTT
          1 GGG-CATTTTAGTCATTT

       2445 TAAGTTCATA


Statistics
Matches: 91,  Mismatches: 4, Indels: 6
        0.90            0.04        0.06

Matches are distributed among these distances:
  26    6  0.07
  27   83  0.91
  28    2  0.02

ACGTcount: A:0.23, C:0.18, G:0.20, T:0.39


Consensus pattern (27 bp):   
GGGCATTTTAGTCATTTGCACATTCAA

Done.