Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001304.1 Corchorus olitorius cultivar O-4 contig01304, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1878
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34


Found at i:627 original size:20 final size:22

Alignment explanation


    Indices: 604--644  Score: 68
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        594 TCGAGCTCGG

                                  
        604 CTCGAA-TTTTC-CGAGTCGAA
          1 CTCGAATTTTTCTCGAGTCGAA

                                 
        624 CTCGAATTTTTCTCGAGTCGA
          1 CTCGAATTTTTCTCGAGTCGA

        645 GCCTGAGTAG


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  20    6  0.32
  21    5  0.26
  22    8  0.42

ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34


Consensus pattern (22 bp):   
CTCGAATTTTTCTCGAGTCGAA

Done.