genome.fa.s13040.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013040.1 Corchorus olitorius cultivar O-4 contig13073, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134614

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1189--1227	20	1.9	21	94	5	71	48	10	2	38	1.51
2120--2664	52	10.6	52	88	3	764	37	14	18	28	1.90
2120--2664	103	5.3	103	91	2	794	37	14	18	28	1.90
6496--6625	63	2.1	63	95	2	235	53	13	20	11	1.71
9041--9084	22	2.1	21	83	8	54	40	13	25	20	1.89
10248--10299	19	2.7	19	84	0	68	57	0	1	40	1.10
10838--10878	22	1.9	22	90	5	66	46	2	4	46	1.37
13924--13957	17	2.0	17	94	0	59	11	32	17	38	1.86
15330--15370	13	3.2	13	77	19	50	34	39	0	26	1.57
15320--15370	25	2.0	25	96	0	93	33	37	0	29	1.58
15320--15357	12	3.1	12	79	20	51	34	34	0	31	1.58
20321--20364	22	2.0	23	86	4	63	20	22	18	38	1.93
23285--23368	33	2.6	32	83	5	96	21	20	2	55	1.54
23399--23466	28	2.6	25	74	14	66	32	19	1	47	1.58
23417--23662	28	8.9	28	76	14	167	28	19	1	51	1.55
23640--23837	40	4.6	40	75	16	180	32	18	1	47	1.58
23620--23919	68	4.4	67	75	15	296	32	18	1	48	1.57
23685--23757	27	2.7	27	91	0	119	28	17	1	52	1.54
23732--23797	20	3.3	20	68	8	62	33	16	0	50	1.46
23582--23920	108	3.4	96	78	12	353	31	18	1	48	1.56
28619--28643	2	12.5	2	100	0	50	52	0	0	48	1.00
33231--33273	17	2.5	17	80	0	50	23	20	25	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46505--46532	14	2.0	14	100	0	56	42	7	21	28	1.79
58700--58735	19	1.9	18	88	5	54	33	22	2	41	1.68
58700--58746	11	4.7	10	80	17	53	31	23	4	40	1.74
59861--59919	29	2.0	29	93	0	100	27	25	5	42	1.76
73098--73203	27	4.0	26	87	3	140	22	18	23	34	1.96
73290--73325	17	2.1	17	94	0	63	27	13	11	47	1.77
76260--76300	21	1.9	22	90	5	66	21	21	9	46	1.80
77106--77141	17	2.1	18	89	5	56	75	5	13	5	1.17
78048--78082	17	2.1	17	88	0	52	14	14	2	68	1.32
78333--78589	137	1.9	136	83	8	333	39	10	1	48	1.45
79667--79699	3	10.7	3	93	6	57	66	0	0	33	0.92
83500--83524	13	1.9	13	100	0	50	28	16	16	40	1.89
87176--87225	24	2.1	24	81	3	57	48	2	6	44	1.39
93161--93211	24	2.2	23	92	3	84	19	9	9	60	1.55
94600--94827	52	4.4	52	93	1	370	35	19	14	29	1.92
94847--94871	7	3.6	7	100	0	50	24	0	12	64	1.27
95370--95405	6	5.8	6	96	3	63	0	19	0	80	0.71
103502--103592	27	3.4	27	81	6	121	17	9	19	52	1.72
104418--104557	52	2.7	52	89	0	208	30	16	17	35	1.92
104522--104580	28	2.1	27	90	3	91	32	16	13	37	1.88
105790--105828	18	2.2	18	86	9	53	38	15	30	15	1.88
112254--112284	14	2.2	14	100	0	62	19	25	12	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118437--118472	19	1.9	18	88	5	54	41	2	22	33	1.68
120010--120034	6	4.2	6	100	0	50	0	16	0	84	0.63
125696--125725	12	2.5	12	100	0	60	46	16	10	26	1.78
127308--127332	1	25.0	1	100	0	50	100	0	0	0	0.00
131215--131319	52	2.0	52	94	0	183	23	28	24	22	1.99
131345--131385	21	2.0	21	90	0	64	26	21	29	21	1.99
133433--133562	33	3.9	32	82	4	125	43	21	8	26	1.81
133568--133691	60	2.1	60	92	0	203	36	12	14	37	1.83

Tables:   1

The End!