Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013042.1 Corchorus olitorius cultivar O-4 contig13075, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46108

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5436--5596
78
2.1
79
95
1
288
17
21
9
51
1.73
8151--8176
12
2.2
12
100
0
52
7
7
30
53
1.57
9176--9408
41
5.9
37
75
14
177
30
16
15
37
1.90
9100--9408
42
7.6
40
74
14
196
32
15
15
35
1.90
9100--9381
79
3.5
77
75
11
232
32
15
14
36
1.88
13030--13081
25
2.1
25
88
0
77
30
21
7
40
1.81
16246--16273
13
2.2
13
100
0
56
35
0
35
28
1.58
18567--18708
62
2.3
61
88
5
209
36
14
15
33
1.88
18567--18708
28
4.7
29
76
17
146
36
14
15
33
1.88
25212--25318
31
3.5
30
69
19
96
26
20
21
31
1.98
25198--25314
60
2.0
60
91
3
191
29
18
20
31
1.97
41144--41184
2
20.0
2
90
5
64
46
0
2
51
1.14

Tables:   1

The End!