Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013043.1 Corchorus olitorius cultivar O-4 contig13076, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5887
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34


Found at i:2315 original size:21 final size:21

Alignment explanation


    Indices: 2291--2362  Score: 126
    Period size: 21  Copynumber: 3.4  Consensus size: 21

       2281 TGCTAGGAAT

                           *     
       2291 TCATTGGAGAAGGTTCCAAGC
          1 TCATTGGAGAAGGTTTCAAGC

                       *         
       2312 TCATTGGAGAAAGTTTCAAGC
          1 TCATTGGAGAAGGTTTCAAGC

                                 
       2333 TCATTGGAGAAGGTTTCAAGC
          1 TCATTGGAGAAGGTTTCAAGC

                     
       2354 TCATTGGAG
          1 TCATTGGAG

       2363 TTGCCTAAGG


Statistics
Matches: 48,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  21   48  1.00

ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28


Consensus pattern (21 bp):   
TCATTGGAGAAGGTTTCAAGC
Done.