Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013044.1 Corchorus olitorius cultivar O-4 contig13077, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21524

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3170--3210
20
2.0
20
100
0
82
41
9
9
39
1.71
5534--5563
14
2.1
14
93
0
51
13
43
13
30
1.82
6259--6319
31
2.0
30
90
3
95
62
8
6
22
1.47
7506--7739
116
2.0
115
95
0
423
25
14
38
22
1.91
8550--8581
3
10.7
3
100
0
64
68
0
31
0
0.90
9529--9569
18
2.3
18
100
0
82
34
17
9
39
1.82
10331--10401
29
2.4
31
81
11
85
23
12
15
47
1.80
13164--13191
14
2.0
14
100
0
56
0
14
0
85
0.59
13550--13639
44
2.0
44
100
0
180
35
15
17
31
1.92
17406--17446
20
2.0
21
90
4
66
41
17
12
29
1.85
20945--21078
33
4.1
33
77
7
121
25
8
22
43
1.82

Tables:   1

The End!