Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013050.1 Corchorus olitorius cultivar O-4 contig13083, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3315
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31


Found at i:1946 original size:21 final size:21

Alignment explanation


    Indices: 1918--1966  Score: 62
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       1908 TTGGAATGGC

                           *     
       1918 GATGGCACAGGCATAGCCGGT
          1 GATGGCACAGGCATAACCGGT

             *      *   *        
       1939 GGTGGCACGGGCTTAACCGGT
          1 GATGGCACAGGCATAACCGGT

                   
       1960 GATGGCA
          1 GATGGCA

       1967 TGGTGAATGG


Statistics
Matches: 23,  Mismatches: 5, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.20, C:0.22, G:0.41, T:0.16


Consensus pattern (21 bp):   
GATGGCACAGGCATAACCGGT
Done.