Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013053.1 Corchorus olitorius cultivar O-4 contig13086, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22431

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--41
2
20.5
2
100
0
82
48
0
0
51
1.00
4375--4407
5
6.6
5
100
0
66
81
0
0
18
0.68
11786--12000
22
9.8
22
77
8
197
39
8
13
38
1.76
11787--12000
44
4.8
45
84
7
226
39
8
13
38
1.75
12058--12082
2
12.5
2
100
0
50
48
0
0
52
1.00
12295--13036
400
1.9
398
81
5
908
29
14
13
42
1.84
12621--13792
436
2.7
433
84
6
1398
31
14
11
42
1.82
12621--13792
440
2.7
431
83
6
1385
31
14
11
42
1.82
15309--15344
2
17.5
2
94
5
63
47
0
2
50
1.15
16310--16353
15
2.8
16
79
6
54
25
20
27
27
1.99
16333--16391
31
1.9
31
85
0
82
35
22
18
23
1.96
17936--17974
16
2.5
16
87
4
53
35
10
15
38
1.81
18327--18462
39
3.5
39
76
8
141
37
2
25
34
1.71
19198--19245
25
1.9
25
83
8
62
50
2
8
39
1.44

Tables:   1

The End!