Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013056.1 Corchorus olitorius cultivar O-4 contig13089, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4851
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32


Found at i:3465 original size:57 final size:57

Alignment explanation


    Indices: 3394--3507  Score: 169
    Period size: 57  Copynumber: 2.0  Consensus size: 57

       3384 TGATAACTTG

                                    *                                  
       3394 GATCATCATCAACAACCAGCT-GCTGATCATTCTGGTC-GCGAAGAGGCAGCAAGGGAA
          1 GATCATCATCAACAACCAG-TAGCAGATCATTCTGGTCAGC-AAGAGGCAGCAAGGGAA

                                     * *                             
       3451 GATCATCATCAACAACCAGTAGCAGCTGATTCTGGTCAGCAAGAGGCAGCAAGGGAA
          1 GATCATCATCAACAACCAGTAGCAGATCATTCTGGTCAGCAAGAGGCAGCAAGGGAA

       3508 CTGCCAAAAT


Statistics
Matches: 52,  Mismatches: 3, Indels: 4
        0.88            0.05        0.07

Matches are distributed among these distances:
  56    1  0.02
  57   49  0.94
  58    2  0.04

ACGTcount: A:0.33, C:0.24, G:0.26, T:0.17


Consensus pattern (57 bp):   
GATCATCATCAACAACCAGTAGCAGATCATTCTGGTCAGCAAGAGGCAGCAAGGGAA
Done.