Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013069.1 Corchorus olitorius cultivar O-4 contig13102, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50156

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
966--1049
44
1.9
44
85
0
114
39
20
8
32
1.82
968--1081
22
5.2
22
71
8
70
36
16
10
35
1.83
1168--1209
22
1.9
22
90
0
66
38
21
4
35
1.75
5983--6031
15
3.3
15
79
0
53
2
32
4
61
1.26
6573--6606
16
2.1
16
94
0
59
20
5
17
55
1.62
6629--6667
19
2.1
19
100
0
78
25
15
23
35
1.94
10610--10645
10
3.6
10
88
0
54
55
16
13
13
1.69
10842--10880
7
5.4
7
88
11
53
58
0
0
41
0.98
10842--10881
16
2.5
17
92
8
66
60
0
0
40
0.97
17379--17411
5
6.8
5
89
3
50
0
15
3
81
0.80
17518--17569
26
2.0
26
100
0
104
34
26
7
30
1.85
17756--17949
102
1.9
102
94
0
343
39
11
11
37
1.78
18102--18431
178
1.9
178
88
1
500
34
14
15
35
1.88
25591--25654
18
3.5
19
79
8
62
15
10
26
46
1.79
32387--32511
65
1.9
65
96
0
232
21
29
27
21
1.99
32705--32775
21
3.4
21
90
3
108
26
28
18
26
1.98
38358--38483
66
1.9
66
83
6
166
42
11
7
38
1.71
38358--38516
22
7.2
22
77
9
137
39
14
8
37
1.76
38467--38516
21
2.3
21
86
6
64
36
18
8
38
1.80
45970--46033
31
2.1
31
91
5
103
18
6
14
60
1.54

Tables:   1

The End!