Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001307.1 Corchorus olitorius cultivar O-4 contig01307, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2031
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30


Found at i:1897 original size:30 final size:30

Alignment explanation


    Indices: 1863--1942  Score: 97
    Period size: 30  Copynumber: 2.7  Consensus size: 30

       1853 TTTGGATTAG

                      *   * * *           
       1863 AAGATTAAATTTTTGATTGATTTGTAAATA
          1 AAGATTAAATCTTTAAGTAATTTGTAAATA

                 *  *                     
       1893 AAGATGAAGTCTTTAAGTAATTTGTAAATA
          1 AAGATTAAATCTTTAAGTAATTTGTAAATA

                  *             
       1923 AAGATTGAATCTTTAAGTAA
          1 AAGATTAAATCTTTAAGTAA

       1943 AAGGTGAAAT


Statistics
Matches: 41,  Mismatches: 9, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  30   41  1.00

ACGTcount: A:0.42, C:0.03, G:0.15, T:0.40


Consensus pattern (30 bp):   
AAGATTAAATCTTTAAGTAATTTGTAAATA
Done.