Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013070.1 Corchorus olitorius cultivar O-4 contig13103, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48264

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1130--1174
21
2.1
21
91
0
72
40
31
11
17
1.85
4548--4588
20
2.1
19
86
4
55
14
36
9
39
1.79
4805--4888
10
9.0
10
71
19
56
44
0
1
54
1.07
4811--4889
7
11.1
7
77
17
65
45
0
1
53
1.08
4805--4873
29
2.6
27
84
11
88
40
0
1
57
1.07
4909--5005
33
2.9
33
85
0
122
25
22
34
17
1.96
6884--6910
1
27.0
1
100
0
54
100
0
0
0
0.00
10184--10272
20
4.4
20
100
0
178
14
19
25
40
1.89
10394--10436
17
2.6
16
85
10
59
20
23
20
34
1.96
10610--10710
53
1.9
53
84
8
134
27
10
17
43
1.83
12307--12395
44
2.0
44
95
0
160
56
3
1
39
1.23
16433--16531
51
1.9
51
81
4
119
22
27
12
38
1.89
20650--20708
31
1.9
31
92
0
100
25
15
8
50
1.71
21530--21571
22
1.9
22
85
0
57
19
14
19
47
1.82
23151--23207
25
2.4
25
88
5
82
31
5
3
59
1.36
23452--23513
31
2.0
31
93
0
106
29
22
6
41
1.78
23512--23688
93
1.9
93
90
0
282
34
12
1
51
1.47
26938--26963
7
3.7
7
100
0
52
84
0
0
15
0.62
38143--38204
2
31.5
2
95
3
108
0
51
0
48
1.00
41899--41940
9
4.4
10
80
19
54
71
2
0
26
0.98
41890--41940
20
2.6
21
78
12
63
72
1
0
25
0.95
43002--43145
72
2.0
72
86
0
198
25
11
18
45
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47118--47160
15
2.9
15
86
10
54
30
0
2
67
1.03
48070--48099
15
2.1
15
93
6
53
66
0
0
33
0.92

Tables:   1

The End!