Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01013071.1 Corchorus olitorius cultivar O-4 contig13104, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23526
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Found at i:467 original size:28 final size:25
Alignment explanation
Indices: 425--477 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
415 AATCTATCCT
*
425 TCCATTCATCTATCATCAAGTTTTTCA
1 TCCATTCATCCATCA--AAGTTTTTCA
452 TCCATCTCATCCATCAAAGTTTTTCA
1 TCCAT-TCATCCATCAAAGTTTTTCA
478 AATTTTCAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 10 0.42
27 5 0.21
28 9 0.38
ACGTcount: A:0.26, C:0.28, G:0.04, T:0.42
Consensus pattern (25 bp):
TCCATTCATCCATCAAAGTTTTTCA
Found at i:2097 original size:33 final size:33
Alignment explanation
Indices: 1996--2133 Score: 120
Period size: 33 Copynumber: 4.2 Consensus size: 33
1986 TTGCAAAGAG
* ** * *
1996 TGTTTTAGATGTTGTTTGCAATGATACTAAACC
1 TGTTTTAGGTGTTGTTTGTGATGAAACTAAATC
** *
2029 TAATTT-GAGTGTTGTTTGTGATGACACTAAATC
1 TGTTTTAG-GTGTTGTTTGTGATGAAACTAAATC
2062 TGTTTTAGGTGTTGTTTGTGATGAAAC-AAATTC
1 TGTTTTAGGTGTTGTTTGTGATGAAACTAAA-TC
* ** *
2095 TGTTTT-GGATGCTAATTGTGATGAAAATAAATC
1 TGTTTTAGG-TGTTGTTTGTGATGAAACTAAATC
2128 TGTTTT
1 TGTTTT
2134 GGTTGATCAT
Statistics
Matches: 86, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
32 6 0.07
33 76 0.88
34 4 0.05
ACGTcount: A:0.27, C:0.08, G:0.21, T:0.44
Consensus pattern (33 bp):
TGTTTTAGGTGTTGTTTGTGATGAAACTAAATC
Found at i:3964 original size:21 final size:21
Alignment explanation
Indices: 3929--4017 Score: 153
Period size: 21 Copynumber: 4.2 Consensus size: 21
3919 TAGGAGTTCG
3929 TTGGAGCAA-GTTCCAAGCTCA
1 TTGGAG-AAGGTTCCAAGCTCA
*
3950 TTGTAGAAGGTTCCAAGCTCA
1 TTGGAGAAGGTTCCAAGCTCA
3971 TTGGAGAAGGTTCCAAGCTCA
1 TTGGAGAAGGTTCCAAGCTCA
3992 TTGGAGAAGGTTCCAAGCTCA
1 TTGGAGAAGGTTCCAAGCTCA
4013 TTGGA
1 TTGGA
4018 ATTGCCTAAG
Statistics
Matches: 65, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
20 2 0.03
21 63 0.97
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (21 bp):
TTGGAGAAGGTTCCAAGCTCA
Found at i:11836 original size:64 final size:64
Alignment explanation
Indices: 11757--11882 Score: 198
Period size: 64 Copynumber: 2.0 Consensus size: 64
11747 TGAAAGAAGG
* **
11757 AAGAAAATTCAGAACAAGTCTTGCCCAGGACTTTGACAACACCTGCCCAGAACTTGTTGCGGGA
1 AAGAAAATTCAGAACAAGTCCTGCCCAGGACTCGGACAACACCTGCCCAGAACTTGTTGCGGGA
* * *
11821 AAGAAAATTCAGAACAAGTCCTGCCTAGGACTCGGACAACTCCTGCCCAGGACTTGTTGCGG
1 AAGAAAATTCAGAACAAGTCCTGCCCAGGACTCGGACAACACCTGCCCAGAACTTGTTGCGG
11883 AAAAAACCTT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.31, C:0.26, G:0.23, T:0.20
Consensus pattern (64 bp):
AAGAAAATTCAGAACAAGTCCTGCCCAGGACTCGGACAACACCTGCCCAGAACTTGTTGCGGGA
Found at i:19891 original size:20 final size:20
Alignment explanation
Indices: 19866--19905 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
19856 GTTGTTAGGT
*
19866 TTTC-AATTTCTACAAAATTA
1 TTTCAAATTTCGA-AAAATTA
19886 TTTCAAATTTCGAAAAATTA
1 TTTCAAATTTCGAAAAATTA
19906 AGTTGAGAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.42, C:0.12, G:0.03, T:0.42
Consensus pattern (20 bp):
TTTCAAATTTCGAAAAATTA
Found at i:21119 original size:154 final size:154
Alignment explanation
Indices: 20830--23223 Score: 3796
Period size: 154 Copynumber: 15.5 Consensus size: 154
20820 TGAGCTTATG
*
20830 TCATATTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
* * **
20895 ATATCGAGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
66 CTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
20960 CCATTGTTTATGGCCTAACTATAA
131 CCATTGTTTATGGCCTAACTATAA
* *
20984 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGTTCATTTGGAACACTAGTTATTTTGGGC
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
* * * *
21049 CT-TCGGGGCCGATTAGTGACGTTTTGGATCGTATTCGATTTGGCAAAACCTCAAAGCTTTTCTT
66 CTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGC-AAACCTCAATGCTTTTCTT
*
21113 TTCATTGTTTATGGCCTAACTATAA
130 TCCATTGTTTATGGCCTAACTATAA
21138 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
**
21203 CTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
66 CTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
21268 CCATTGTTTATGGCCTAACTATAA
131 CCATTGTTTATGGCCTAACTATAA
21292 TCATTTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGG
1 TCA-TTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGG
* * ** * *
21357 CCTTTCGGGGACCATTAGTTCCATTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTTCT
65 CCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGC-TTTTCT
*
21422 TTCCATTGTTTATGGCCTCACTATAA
129 TTCCATTGTTTATGGCCTAACTATAA
* *
21448 TCATTTTGGTGATATTAGTCCACTGTGAAGTTTTTAGCACATTTGGAACACTTGTTATTTTGGGC
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
* ** **
21513 CTTTCGGGGAGCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGC-AACACTCAATGCTTTTCTT
66 CTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAAC-CTCAATGCTTTTCTT
*
21577 T-AAGTTGTTTATGGCCTAACTATAA
130 TCCA-TTGTTTATGGCCTAACTATAA
* *
21602 TCATTTGGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTCTTATTTTGGGC
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
* ** ** *
21667 CTTTCGGGGAGCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTTCTT
66 CTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGC-TTTTCTT
21732 TCCATTGTTTATGGCCTAACTATAA
130 TCCATTGTTTATGGCCTAACTATAA
* * * *
21757 TCATTTTGGTTAGATTTGTCCACTGTGAAGTTTATAGCTCAGTTGGAACACTTGTTATTTTGGGC
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
* * *
21822 ATATCGAGGCCCATTAGTGACGTTTTAAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
66 CTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
21887 CCATTGTTTATGGCCTAACTATAA
131 CCATTGTTTATGGCCTAACTATAA
* *
21911 TCATATTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGT
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
* * * *
21976 CTATAGGGTCCCATTAGTGACATTTTGAATCGTCTTCGATTTGGCAAACCTCAAAGCTTTTCTTT
66 CTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
*
22041 -AAGTTGTTTATGGCCTAACTATAA
131 CCA-TTGTTTATGGCCTAACTATAA
*
22065 TCA-TTTGGTGA-ATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACATTTGTTATTTTGGGC
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
* * * *
22128 CTAGTCGGGGCTCATTAGTGACGTTTTGAATCATCGTCGATTTGGCAAACCTCATTGCTTTTCTT
66 CTA-TCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTT
*
22193 T-AAGTTGTTTATGGCCTAACTATAA
130 TCCA-TTGTTTATGGCCTAACTATAA
*
22218 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTTAGCTCATTTGGAACATTTGTTATTTTGGG
1 TCATTTTGGTGAGATTAGTCCACTGTGAAG-TTTTTAGCTCATTTGGAACACTTGTTATTTTGGG
*
22283 CCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAAAGCTTTTCTT
65 CCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTT
*
22348 T-AAGTTGTTTATGGCCTAACTATAA
130 TCCA-TTGTTTATGGCCTAACTATAA
* *
22373 TCATTTTGGTGAAATTAGTCCACTGTGAAGTTTTTAACTCATTTGGAACACTTGTTATTTTGGGC
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
* * ** *
22438 CTTTCGGGGACCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTT
66 CTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
*
22503 CCATTGTTTATGGCCTAATTATAA
131 CCATTGTTTATGGCCTAACTATAA
* *
22527 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTTATTTGGAACACTTGTTATTTTGGTC
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
*
22592 CTATCGGGGCCCATTAGTGACGTTTTGAATCATCTTCGATTTGGCAAACCTCATATGCTTTTCTT
66 CTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCA-ATGCTTTTCTT
22657 TCCATTGTTTATGGCCTAACTATAA
130 TCCATTGTTTATGGCCTAACTATAA
22682 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
* * * *
22747 ATATCGAGGCCCATTAGTGACGTTTTAAATCGTCTTCGATTTGGCAAACCTCGATGCTTTTCTTT
66 CTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
22812 CCATTGTTTATGGCCTAACTATAA
131 CCATTGTTTATGGCCTAACTATAA
* *
22836 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACAATTGTTATTTTGGGT
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
* *
22901 CTATAGGGGCCCATTAGTGATGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
66 CTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
22966 CCATTGTTTATGGCCTAACTATAA
131 CCATTGTTTATGGCCTAACTATAA
22990 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
* * ** * * *
23055 CTTTCGGGGACCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGATTTTCTCT
66 CTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
*
23120 CCATTGTTTATGGCCTAATTATAA
131 CCATTGTTTATGGCCTAACTATAA
* * *
23144 TCTTTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATATGGAACACTTGTTATTTTGGGT
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
* *
23209 GTATCGGGGACCATT
66 CTATCGGGGCCCATT
23224 TGATACGAAT
Statistics
Matches: 2086, Mismatches: 138, Indels: 32
0.92 0.06 0.01
Matches are distributed among these distances:
152 53 0.03
153 126 0.06
154 1159 0.56
155 675 0.32
156 73 0.03
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (154 bp):
TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
CTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
CCATTGTTTATGGCCTAACTATAA
Found at i:21763 original size:309 final size:308
Alignment explanation
Indices: 20830--23223 Score: 3832
Period size: 309 Copynumber: 7.8 Consensus size: 308
20820 TGAGCTTATG
*
20830 TCATATTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
* *
20895 ATATCGAGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
66 CTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
*
20960 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGTTCA
131 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
* * * *
21025 TTTGGAACACTAGTTATTTTGGGCCT-TCGGGGCCGATTAGTGACGTTTTGGATCGTATTCGATT
196 TTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATT
* *
21089 TGGCAAAACCTCAAAGCTTTTCTTTTCATTGTTTATGGCCTAACTATAA
261 TGGC-AAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAA
21138 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
21203 CTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
66 CTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
21268 CCATTGTTTATGGCCTAACTATAATCATTTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTC
131 CCATTGTTTATGGCCTAACTATAATCA-TTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTC
* * ** *
21333 ATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGACCATTAGTTCCATTTTGAATCGTCTTCGAT
195 ATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGAT
* *
21398 TTGGCAACCCTCAATGCTTTTTCTTTCCATTGTTTATGGCCTCACTATAA
260 TTGGCAAACCTCAATGC-TTTTCTTTCCATTGTTTATGGCCTAACTATAA
* *
21448 TCATTTTGGTGATATTAGTCCACTGTGAAGTTTTTAGCACATTTGGAACACTTGTTATTTTGGGC
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
* **
21513 CTTTCGGGGAGCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGC-AACACTCAATGCTTTTCTT
66 CTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAAC-CTCAATGCTTTTCTT
* *
21577 T-AAGTTGTTTATGGCCTAACTATAATCATTTGGGTGAGATTAGTCCACTGTGAAGTTTTTAGCT
130 TCCA-TTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCT
* * ** **
21641 CATTTGGAACACTTCTTATTTTGGGCCTTTCGGGGAGCATTAGTTCCGTTTTGAATCGTCTTCGA
194 CATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGA
*
21706 TTTGGCAACCCTCAATGCTTTTTCTTTCCATTGTTTATGGCCTAACTATAA
259 TTTGGCAAACCTCAATGC-TTTTCTTTCCATTGTTTATGGCCTAACTATAA
* * * *
21757 TCATTTTGGTTAGATTTGTCCACTGTGAAGTTTATAGCTCAGTTGGAACACTTGTTATTTTGGGC
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
* * ** *
21822 ATATCGAGGCCCATTAGTGACGTTTTAAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
66 CTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
*
21887 CCATTGTTTATGGCCTAACTATAATCATATTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
131 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
* * * *
21952 TTTGGAACACTTGTTATTTTGGGTCTATAGGGTCCCATTAGTGACATTTTGAATCGTCTTCGATT
196 TTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATT
* *
22017 TGGCAAACCTCAAAGCTTTTCTTT-AAGTTGTTTATGGCCTAACTATAA
261 TGGCAAACCTCAATGCTTTTCTTTCCA-TTGTTTATGGCCTAACTATAA
*
22065 TCA-TTTGGTGA-ATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACATTTGTTATTTTGGGC
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
* ** * * *
22128 CTAGTCGGGGCTCATTAGTGACGTTTTGAATCATCGTCGATTTGGCAAACCTCATTGCTTTTCTT
66 CTA-TCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTT
*
22193 T-AAGTTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTTAGC
130 TCCA-TTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAG-TTTTTAGC
*
22257 TCATTTGGAACATTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG
193 TCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCG
* *
22322 ATTTGGCAAACCTCAAAGCTTTTCTTT-AAGTTGTTTATGGCCTAACTATAA
258 ATTTGGCAAACCTCAATGCTTTTCTTTCCA-TTGTTTATGGCCTAACTATAA
* *
22373 TCATTTTGGTGAAATTAGTCCACTGTGAAGTTTTTAACTCATTTGGAACACTTGTTATTTTGGGC
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
* * *
22438 CTTTCGGGGACCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTT
66 CTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
* *
22503 CCATTGTTTATGGCCTAATTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTTA
131 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
* *
22568 TTTGGAACACTTGTTATTTTGGTCCTATCGGGGCCCATTAGTGACGTTTTGAATCATCTTCGATT
196 TTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATT
22633 TGGCAAACCTCATATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAA
261 TGGCAAACCTCA-ATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAA
22682 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
* * ** * *
22747 ATATCGAGGCCCATTAGTGACGTTTTAAATCGTCTTCGATTTGGCAAACCTCGATGCTTTTCTTT
66 CTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
22812 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
131 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
* * * *
22877 TTTGGAACAATTGTTATTTTGGGTCTATAGGGGCCCATTAGTGATGTTTTGAATCGTCTTCGATT
196 TTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATT
22942 TGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAA
261 TGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAA
22990 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
* * * * *
23055 CTTTCGGGGACCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGATTTTCTCT
66 CTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
* *
23120 CCATTGTTTATGGCCTAATTATAATCTTTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
131 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
* ** *
23185 TATGGAACACTTGTTATTTTGGGTGTATCGGGGACCATT
196 TTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATT
23224 TGATACGAAT
Statistics
Matches: 1938, Mismatches: 132, Indels: 32
0.92 0.06 0.02
Matches are distributed among these distances:
306 51 0.03
307 114 0.06
308 644 0.33
309 861 0.44
310 268 0.14
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (308 bp):
TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
CTATCGGGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
TTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATT
TGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAA
Found at i:22656 original size:925 final size:923
Alignment explanation
Indices: 20830--23223 Score: 3992
Period size: 925 Copynumber: 2.6 Consensus size: 923
20820 TGAGCTTATG
*
20830 TCATATTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
** *
20895 ATATCGAGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
66 ATATCGAGGCCCATTAGTGACGTTTTAAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
*
20960 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGTTCA
131 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
* * * * * *
21025 TTTGGAACACTAGTTATTTTGGGCCT-TCGGGGCCGATTAGTGACGTTTTGGATCGTATTCGATT
196 TTTGGAACACTTGTTATTTTGGGTCTATAGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATT
21089 TGGCAAAACCTCAAAGCTTTTCTTTTCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
261 TGGC-AAACCTCAAAGCTTTTC-TTTCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATT
21154 AGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTA
324 AGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGG-CCATTA
21219 GTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCT
388 GTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT-CATTGTTTATGGCCT
21284 AACTATAATCATTTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTT
452 AACTATAATCA-TTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTT
* ** * *
21349 ATTTTGGGCCTTTCGGGGACCATTAGTTCCATTTTGAATCGTCTTCGATTTGGCAACCCTCAATG
516 ATTTTGGGCCTATCGGGGACCATTAGTGACATTTTGAATCGTCTTCGATTTGGCAAACCTCAAAG
* * *
21414 CTTTTTCTTTCCATTGTTTATGGCCTCACTATAATCATTTTGGTGATATTAGTCCACTGTGAAGT
581 CTTTTTCTTTCAATTGTTTATGGCCTAACTATAATCATTTTGGTGAAATTAGTCCACTGTGAAGT
* *
21479 TTTTAGCACATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGAGCATTAGTTCCGTTTTGAATC
646 TTTTAACACATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGACCATTAGTTCCGTTTTGAATC
21544 GTCTTCGATTTGGCAACACTCAATGCTTTTCTTTAAGTTGTTTATGGCCTAACTATAATCATTTG
711 GTCTTCGATTTGGCAACACTCAATGCTTTTCTTTAAGTTGTTTATGGCCTAACTATAATCATTTG
*
21609 GGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTCTTATTTTGGGCCTTTCGG
776 GGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTCTTATTTTGGGCCTATCGG
* ** * *
21674 GGAGCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTTCTTTCCATTG
841 GGACCATTAGTGACGTTTTGAATCATCTTCGATTTGGCAAACCTCAATGCTTTTTCTTTCCATTG
21739 TTTATGGCCTAACTATAA
906 TTTATGGCCTAACTATAA
* * * *
21757 TCATTTTGGTTAGATTTGTCCACTGTGAAGTTTATAGCTCAGTTGGAACACTTGTTATTTTGGGC
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
21822 ATATCGAGGCCCATTAGTGACGTTTTAAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
66 ATATCGAGGCCCATTAGTGACGTTTTAAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
*
21887 CCATTGTTTATGGCCTAACTATAATCATATTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
131 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
* *
21952 TTTGGAACACTTGTTATTTTGGGTCTATAGGGTCCCATTAGTGACATTTTGAATCGTCTTCGATT
196 TTTGGAACACTTGTTATTTTGGGTCTATAGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATT
*
22017 TGGCAAACCTCAAAGCTTTTCTTTAAGTTGTTTATGGCCTAACTATAATCA-TTTGGTGA-ATTA
261 TGGCAAACCTCAAAGCTTTTCTTTCA-TTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTA
*
22080 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACATTTGTTATTTTGGGCCTAGTCGGGGCTCATTA
325 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTA-TCGGGGC-CATTA
** * * * *
22145 GTGACGTTTTGAATCATCGTCGATTTGGCAAACCTCATTGCTTTTCTTTAAGTTGTTTATGGCCT
388 GTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCA-TTGTTTATGGCCT
*
22210 AACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTTAGCTCATTTGGAACATTTGTT
452 AACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAG-TTTTTAGCTCATTTGGAACACTTGTT
* *
22275 ATTTTGGGCCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAAAG
516 ATTTTGGGCCTATCGGGGACCATTAGTGACATTTTGAATCGTCTTCGATTTGGCAAACCTCAAAG
22340 C-TTTTCTTT-AAGTTGTTTATGGCCTAACTATAATCATTTTGGTGAAATTAGTCCACTGTGAAG
581 CTTTTTCTTTCAA-TTGTTTATGGCCTAACTATAATCATTTTGGTGAAATTAGTCCACTGTGAAG
*
22403 TTTTTAACTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGACCATTAGTTCCGTTTTGAAT
645 TTTTTAACACATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGACCATTAGTTCCGTTTTGAAT
* * *
22468 CGTCTTCGATTTGGCAACCCTCAATGCTTTTCTTTCCA-TTGTTTATGGCCTAATTATAATCATT
710 CGTCTTCGATTTGGCAACACTCAATGCTTTTCTTT-AAGTTGTTTATGGCCTAACTATAATCATT
* * * *
22532 TTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTTATTTGGAACACTTGTTATTTTGGTCCTATC
774 TGGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTCTTATTTTGGGCCTATC
*
22597 GGGGCCCATTAGTGACGTTTTGAATCATCTTCGATTTGGCAAACCTCATATGC-TTTTCTTTCCA
839 GGGGACCATTAGTGACGTTTTGAATCATCTTCGATTTGGCAAACCTCA-ATGCTTTTTCTTTCCA
22661 TTGTTTATGGCCTAACTATAA
903 TTGTTTATGGCCTAACTATAA
22682 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
*
22747 ATATCGAGGCCCATTAGTGACGTTTTAAATCGTCTTCGATTTGGCAAACCTCGATGCTTTTCTTT
66 ATATCGAGGCCCATTAGTGACGTTTTAAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
22812 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
131 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
* *
22877 TTTGGAACAATTGTTATTTTGGGTCTATAGGGGCCCATTAGTGATGTTTTGAATCGTCTTCGATT
196 TTTGGAACACTTGTTATTTTGGGTCTATAGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATT
*
22942 TGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTA
261 TGGCAAACCTCAAAGCTTTTCTTT-CATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTA
*
23007 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGACCATTAG
325 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGG-CCATTAG
* * *
23072 TTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGATTTTCTCTCCATTGTTTATGGCCTA
389 TTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCT-TTCATTGTTTATGGCCTA
* * *
23137 ATTATAATCTTTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATATGGAACACTTGTTAT
453 ACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTAT
**
23202 TTTGGGTGTATCGGGGACCATT
518 TTTGGGCCTATCGGGGACCATT
23224 TGATACGAAT
Statistics
Matches: 1369, Mismatches: 84, Indels: 30
0.92 0.06 0.02
Matches are distributed among these distances:
924 1 0.00
925 737 0.54
926 289 0.21
927 306 0.22
928 36 0.03
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (923 bp):
TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
ATATCGAGGCCCATTAGTGACGTTTTAAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
TTTGGAACACTTGTTATTTTGGGTCTATAGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATT
TGGCAAACCTCAAAGCTTTTCTTTCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAG
TCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCATTAGTT
CCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCATTGTTTATGGCCTAACT
ATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT
GGGCCTATCGGGGACCATTAGTGACATTTTGAATCGTCTTCGATTTGGCAAACCTCAAAGCTTTT
TCTTTCAATTGTTTATGGCCTAACTATAATCATTTTGGTGAAATTAGTCCACTGTGAAGTTTTTA
ACACATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGACCATTAGTTCCGTTTTGAATCGTCTT
CGATTTGGCAACACTCAATGCTTTTCTTTAAGTTGTTTATGGCCTAACTATAATCATTTGGGTGA
GATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTCTTATTTTGGGCCTATCGGGGACC
ATTAGTGACGTTTTGAATCATCTTCGATTTGGCAAACCTCAATGCTTTTTCTTTCCATTGTTTAT
GGCCTAACTATAA
Found at i:22821 original size:463 final size:461
Alignment explanation
Indices: 20830--23207 Score: 3816
Period size: 463 Copynumber: 5.1 Consensus size: 461
20820 TGAGCTTATG
*
20830 TCATATTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
**
20895 ATATCGAGGCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
66 ATATCGAGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
*
20960 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGTTCA
131 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
* * *
21025 TTTGGAACACTAGTTATTTTGGGCC-TTCGGGG-CCGATTAGTGACGTTTTGGATCGTATTCGAT
196 TTTGGAACACTTGTTATTTTGGGCCTTTCGGGGACC-ATTAGTGACGTTTTGAATCGTCTTCGAT
*
21088 TTGGCAAAACCTCAAAGCTTTTCTTTTCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGAT
260 TTGGC-AAACCTCAATGCTTTTC-TTTCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGAT
21153 TAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATT
323 TAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATT
21218 AGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCC
388 AGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCC
21283 TAACTATAA
453 TAACTATAA
21292 TCATTTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGG
1 TCA-TTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGG
* * * * ** * *
21357 CCTTTCGGGGACCATTAGTTCCATTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTTCT
65 CATATCGAGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGC-TTTTCT
* * *
21422 TTCCATTGTTTATGGCCTCACTATAATCATTTTGGTGATATTAGTCCACTGTGAAGTTTTTAGCA
129 TTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCT
* **
21487 CATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGAGCATTAGTTCCGTTTTGAATCGTCTTCGA
194 CATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGACCATTAGTGACGTTTTGAATCGTCTTCGA
* *
21552 TTTGGC-AACACTCAATGCTTTTCTTTAAGTTGTTTATGGCCTAACTATAATCATTTGGGTGAGA
259 TTTGGCAAAC-CTCAATGCTTTTCTTTCA-TTGTTTATGGCCTAACTATAATCATTTTGGTGAGA
* * **
21616 TTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTCTTATTTTGGGCCTTTCGGGGAGCAT
322 TTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCAT
*
21681 TAGTTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGCTTTTTCTTTCCATTGTTTATGG
387 TAGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGC-TTTTCTTTCCATTGTTTATGG
21746 CCTAACTATAA
451 CCTAACTATAA
* * * *
21757 TCATTTTGGTTAGATTTGTCCACTGTGAAGTTTATAGCTCAGTTGGAACACTTGTTATTTTGGGC
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
*
21822 ATATCGAGGCCCATTAGTGACGTTTTAAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
66 ATATCGAGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
*
21887 CCATTGTTTATGGCCTAACTATAATCATATTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
131 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
* * * ** *
21952 TTTGGAACACTTGTTATTTTGGGTCTATAGGGTCCCATTAGTGACATTTTGAATCGTCTTCGATT
196 TTTGGAACACTTGTTATTTTGGGCCTTTCGGGGACCATTAGTGACGTTTTGAATCGTCTTCGATT
* *
22017 TGGCAAACCTCAAAGCTTTTCTTTAAGTTGTTTATGGCCTAACTATAATCA-TTTGGTGA-ATTA
261 TGGCAAACCTCAATGCTTTTCTTTCA-TTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTA
* *
22080 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACATTTGTTATTTTGGGCCTAGTCGGGGCTCATTA
325 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTA-TCGGGGCCCATTA
** * * * *
22145 GTGACGTTTTGAATCATCGTCGATTTGGCAAACCTCATTGCTTTTCTTT-AAGTTGTTTATGGCC
389 GTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCA-TTGTTTATGGCC
22209 TAACTATAA
453 TAACTATAA
*
22218 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTTAGCTCATTTGGAACATTTGTTATTTTGGG
1 TCATTTTGGTGAGATTAGTCCACTGTGAAG-TTTTTAGCTCATTTGGAACACTTGTTATTTTGGG
* * *
22283 CCTATCGGGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAAAGCTTTTCTT
65 CATATCGAGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTT
* * *
22348 T-AAGTTGTTTATGGCCTAACTATAATCATTTTGGTGAAATTAGTCCACTGTGAAGTTTTTAACT
130 TCCA-TTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCT
**
22412 CATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGACCATTAGTTCCGTTTTGAATCGTCTTCGA
194 CATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGACCATTAGTGACGTTTTGAATCGTCTTCGA
* *
22477 TTTGGCAACCCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAATTATAATCATTTTGGTGAGAT
259 TTTGGCAAACCTCAATGCTTTTCTTT-CATTGTTTATGGCCTAACTATAATCATTTTGGTGAGAT
* *
22542 TAGTCCACTGTGAAGTTTTTAGCTTATTTGGAACACTTGTTATTTTGGTCCTATCGGGGCCCATT
323 TAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATT
** *
22607 AGTGACGTTTTGAATCATCTTCGATTTGGCAAACCTCATATGCTTTTCTTTCCATTGTTTATGGC
388 AGTTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCA-ATGCTTTTCTTTCCATTGTTTATGGC
22672 CTAACTATAA
452 CTAACTATAA
22682 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
* *
22747 ATATCGAGGCCCATTAGTGACGTTTTAAATCGTCTTCGATTTGGCAAACCTCGATGCTTTTCTTT
66 ATATCGAGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
22812 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
131 CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
* * * * * *
22877 TTTGGAACAATTGTTATTTTGGGTCTATAGGGGCCCATTAGTGATGTTTTGAATCGTCTTCGATT
196 TTTGGAACACTTGTTATTTTGGGCCTTTCGGGGACCATTAGTGACGTTTTGAATCGTCTTCGATT
22942 TGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTA
261 TGGCAAACCTCAATGCTTTTCTTT-CATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTA
* *
23007 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGACCATTAG
325 GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAG
* * *
23072 TTCCGTTTTGAATCGTCTTCGATTTGGCAACCCTCAATGATTTTCTCTCCATTGTTTATGGCCTA
390 TTCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTA
*
23137 ATTATAA
455 ACTATAA
* *
23144 TCTTTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATATGGAACACTTGTTATTTTGGG
1 TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGG
23208 TGTATCGGGG
Statistics
Matches: 1769, Mismatches: 129, Indels: 36
0.91 0.07 0.02
Matches are distributed among these distances:
460 1 0.00
461 110 0.06
462 405 0.23
463 714 0.40
464 466 0.26
465 72 0.04
466 1 0.00
ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41
Consensus pattern (461 bp):
TCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGC
ATATCGAGGCCCATTAGTGACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTT
CCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAGTCCACTGTGAAGTTTTTAGCTCA
TTTGGAACACTTGTTATTTTGGGCCTTTCGGGGACCATTAGTGACGTTTTGAATCGTCTTCGATT
TGGCAAACCTCAATGCTTTTCTTTCATTGTTTATGGCCTAACTATAATCATTTTGGTGAGATTAG
TCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTATCGGGGCCCATTAGT
TCCGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTCTTTCCATTGTTTATGGCCTAA
CTATAA
Done.