Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013075.1 Corchorus olitorius cultivar O-4 contig13108, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21746

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2143--2210
34
2.0
34
100
0
136
32
23
14
29
1.94
2805--2843
19
2.1
19
90
4
62
35
33
17
12
1.88
2808--2854
18
2.6
19
83
6
62
34
31
21
12
1.91
3092--3182
27
3.3
26
83
9
101
36
27
18
17
1.94
3081--3182
28
3.7
27
82
2
114
37
26
19
16
1.93
3641--4031
50
7.7
50
91
1
611
28
13
27
30
1.94
8799--8831
17
1.9
17
93
0
57
45
6
9
39
1.61
10880--11298
91
4.8
82
90
3
450
37
14
19
29
1.91
10951--11341
91
4.3
91
93
1
630
36
13
18
30
1.90
10880--11341
182
2.6
178
87
7
658
36
13
19
30
1.91
11757--11906
50
3.0
50
89
0
228
37
13
16
33
1.87
11911--11944
15
2.2
16
89
5
52
32
14
8
44
1.76
12495--12543
25
1.9
26
83
4
64
6
0
14
79
0.91
12501--12544
18
2.2
20
84
15
65
6
0
13
79
0.92
13025--13056
14
2.1
16
88
11
50
12
18
18
50
1.78
18087--18133
17
2.6
18
80
6
51
14
10
6
68
1.38
20899--20965
34
2.0
34
100
0
134
34
20
14
29
1.93
21550--21588
19
2.1
19
90
4
62
35
33
17
12
1.88
21553--21599
18
2.6
19
83
6
62
34
31
21
12
1.91

Tables:   1

The End!