Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013077.1 Corchorus olitorius cultivar O-4 contig13110, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12577
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32


Found at i:5188 original size:15 final size:14

Alignment explanation


    Indices: 5153--5190  Score: 51
    Period size: 14  Copynumber: 2.7  Consensus size: 14

       5143 TTATCATTTA

                          
       5153 TTATATA-TAAAAT
          1 TTATATATTAAAAT

             *            
       5166 TAATATATTAAAAT
          1 TTATATATTAAAAT

                       
       5180 TTATAATATTA
          1 TTAT-ATATTA

       5191 TTAACAATTC


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  13    6  0.29
  14    9  0.43
  15    6  0.29

ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47


Consensus pattern (14 bp):   
TTATATATTAAAAT

Found at i:11394 original size:5 final size:5

Alignment explanation


    Indices: 11379--11409  Score: 53
    Period size: 5  Copynumber: 6.0  Consensus size: 5

      11369 GCCAATTGAC

                                                
      11379 TATATA TATAA TATAA TATAA TATAA TATAA
          1 TATA-A TATAA TATAA TATAA TATAA TATAA

      11410 AGGGGCTATG


Statistics
Matches: 25,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   5   21  0.84
   6    4  0.16

ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42


Consensus pattern (5 bp):   
TATAA

Done.