Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013079.1 Corchorus olitorius cultivar O-4 contig13112, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19644

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--40
2
19.0
2
100
0
76
50
0
0
50
1.00
1793--1826
5
6.8
5
96
0
59
61
2
0
35
1.11
2664--2693
12
2.5
12
88
0
51
33
60
0
6
1.23
4529--4562
7
4.9
7
100
0
68
29
29
0
41
1.57
5798--5823
2
13.0
2
100
0
52
50
0
0
50
1.00
7498--7541
23
1.9
23
81
9
54
61
0
13
25
1.32
7494--7703
111
2.0
104
84
10
273
51
2
11
34
1.51
9485--9542
22
2.6
23
81
8
66
37
12
20
29
1.89
9559--9759
44
4.6
44
74
6
147
37
10
17
34
1.84
9559--9891
22
15.2
22
67
12
87
39
8
16
35
1.80
11089--11150
22
2.8
22
75
0
61
38
9
16
35
1.81
11287--11341
23
2.4
23
84
3
67
30
12
16
40
1.86
11441--11538
22
4.5
22
73
13
69
33
9
14
42
1.77
12294--12336
20
2.2
20
100
0
86
27
23
13
34
1.93
12830--12881
29
1.9
26
85
14
70
63
3
1
30
1.23
13285--13330
16
2.9
16
86
0
56
8
8
32
50
1.64

Tables:   1

The End!