Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01013082.1 Corchorus olitorius cultivar O-4 contig13115, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3550
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.38
Found at i:2166 original size:148 final size:148
Alignment explanation
Indices: 1895--2190 Score: 583
Period size: 148 Copynumber: 2.0 Consensus size: 148
1885 GACTTTATAG
1895 TTTTTTTTTTTTCAATGTAGTGATAATTTGACTGGTCCTTATTAACCTTTTTGATCATGTTAATT
1 TTTTTTTTTTTTCAATGTAGTGATAATTTGACTGGTCCTTATTAACCTTTTTGATCATGTTAATT
*
1960 CTCTATCACTTGACTTCATATTTGCTCTTTTCTCTAGTTGTATGTCATACACTGCTCATATGCTA
66 CTCTATCACTTGACTTCATATTTGCTCTTTTCTCTAGTTGTATGTCATACACTACTCATATGCTA
2025 CAACATTGATTCAAACTC
131 CAACATTGATTCAAACTC
2043 TTTTTTTTTTTTCAATGTAGTGATAATTTGACTGGTCCTTATTAACCTTTTTGATCATGTTAATT
1 TTTTTTTTTTTTCAATGTAGTGATAATTTGACTGGTCCTTATTAACCTTTTTGATCATGTTAATT
2108 CTCTATCACTTGACTTCATATTTGCTCTTTTCTCTAGTTGTATGTCATACACTACTCATATGCTA
66 CTCTATCACTTGACTTCATATTTGCTCTTTTCTCTAGTTGTATGTCATACACTACTCATATGCTA
2173 CAACATTGATTCAAACTC
131 CAACATTGATTCAAACTC
2191 ATCTCCACAT
Statistics
Matches: 147, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
148 147 1.00
ACGTcount: A:0.23, C:0.19, G:0.10, T:0.47
Consensus pattern (148 bp):
TTTTTTTTTTTTCAATGTAGTGATAATTTGACTGGTCCTTATTAACCTTTTTGATCATGTTAATT
CTCTATCACTTGACTTCATATTTGCTCTTTTCTCTAGTTGTATGTCATACACTACTCATATGCTA
CAACATTGATTCAAACTC
Done.