genome.fa.s13084.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013084.1 Corchorus olitorius cultivar O-4 contig13117, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65791

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1548--1589	15	2.7	15	96	3	75	11	7	14	66	1.43
7684--7722	15	2.5	16	95	4	71	12	7	12	66	1.43
9326--9482	60	2.6	60	84	6	185	35	17	20	26	1.94
9459--9556	32	2.9	34	72	6	110	36	15	21	26	1.93
9555--9923	39	9.5	38	87	5	490	32	18	16	31	1.94
14236--14368	38	3.5	38	85	5	187	33	19	14	32	1.92
14392--14769	54	7.2	53	76	5	311	34	22	14	28	1.93
14392--14738	104	3.3	103	82	2	388	35	23	14	27	1.93
14798--14890	24	3.9	24	82	0	105	44	8	17	30	1.78
14853--14903	8	6.6	8	77	8	52	45	5	21	27	1.75
14859--14905	14	3.2	14	82	11	58	46	6	21	25	1.74
14870--14917	22	2.2	22	88	7	71	43	6	20	29	1.76
14976--15075	35	2.8	35	76	8	87	40	16	20	24	1.91
14925--15230	96	3.2	96	87	1	434	36	19	20	23	1.95
15095--15230	35	4.1	34	65	24	94	35	18	22	24	1.96
16259--16305	6	7.7	6	81	11	51	2	12	4	80	0.94
16983--17032	14	3.6	14	75	20	52	36	12	8	44	1.71
17516--17608	48	1.9	48	93	0	159	31	12	7	48	1.69
18859--18894	19	1.9	18	88	5	54	41	5	22	30	1.76
23706--23751	22	2.1	22	100	0	92	17	4	13	65	1.42
27832--28020	52	3.6	52	92	1	315	39	14	17	27	1.89
27992--28063	36	2.0	37	94	2	128	37	16	15	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28076--28111	18	2.0	18	94	0	63	22	0	13	63	1.29
28078--28117	18	2.2	18	86	0	53	22	2	12	62	1.42
33057--33162	56	1.9	54	94	3	185	48	9	8	33	1.66
44185--44258	25	3.0	25	89	0	121	14	32	18	33	1.92
50324--50354	15	2.1	15	93	0	53	38	3	25	32	1.72
55771--55818	23	2.2	21	85	7	60	41	10	16	31	1.82
58238--58542	30	10.3	30	87	4	381	46	17	15	20	1.83
58238--58542	60	5.1	60	88	3	431	46	17	15	20	1.83
58238--58542	90	3.4	90	86	2	429	46	17	15	20	1.83
58789--59431	71	9.0	70	77	6	488	40	19	21	19	1.92
58778--59431	36	18.3	34	78	7	468	40	18	21	19	1.92
58786--59431	179	3.6	177	78	7	621	40	19	21	19	1.92
58778--59431	215	3.0	218	81	5	622	40	18	21	19	1.92

Tables:   1

The End!