Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013089.1 Corchorus olitorius cultivar O-4 contig13122, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8016

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
532--579
25
1.9
25
91
0
78
39
8
18
33
1.81
1127--1551
50
8.5
50
93
0
724
28
12
27
31
1.93
1946--2132
50
3.7
50
86
0
266
31
14
19
34
1.93
2709--2747
6
6.3
6
88
11
53
15
0
15
69
1.20
2709--2786
20
3.5
21
81
11
77
15
1
14
69
1.26
2717--2787
29
2.6
29
78
14
87
15
1
14
69
1.27
2765--2805
12
3.5
11
87
12
55
14
0
12
73
1.11
2715--2788
8
9.5
8
74
20
52
14
1
13
70
1.24
2775--2807
12
2.8
12
95
4
59
15
0
9
75
1.03

Tables:   1

The End!