Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013092.1 Corchorus olitorius cultivar O-4 contig13125, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3749

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
860--894
14
2.5
14
90
0
61
20
8
14
57
1.63
943--1032
7
12.9
7
90
4
128
24
0
17
57
1.40
1170--1247
33
2.4
33
91
0
120
32
6
17
43
1.75
1351--1881
54
9.8
54
90
1
778
37
21
13
26
1.91
1912--2618
75
9.5
74
88
3
958
43
14
18
23
1.87
1912--2618
149
4.8
148
87
4
958
43
14
18
23
1.87
1912--2613
37
18.9
36
72
7
433
43
13
18
24
1.86
3393--3563
87
2.0
88
88
1
254
28
25
10
36
1.89
3696--3749
4
13.8
4
96
3
101
0
24
0
75
0.80

Tables:   1

The End!