Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013094.1 Corchorus olitorius cultivar O-4 contig13127, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39111

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3851--4064
106
2.0
107
90
1
340
48
7
8
35
1.63
4540--4576
2
19.0
2
94
5
67
51
0
0
48
1.00
8587--8639
20
2.8
20
81
13
58
11
9
1
77
1.07
8587--8638
19
2.9
18
78
13
54
11
9
1
76
1.09
12564--12589
13
2.0
13
100
0
52
15
0
30
53
1.42
14833--14871
18
2.2
18
86
9
53
0
23
0
76
0.78
16724--16785
22
2.8
22
80
0
70
37
11
16
35
1.84
16724--16794
22
3.2
22
75
13
65
35
9
16
38
1.82
25767--26041
135
2.0
134
80
0
307
26
14
23
36
1.93
35280--35308
13
2.2
13
100
0
58
24
6
13
55
1.63
35704--35833
64
2.0
64
98
0
251
30
13
22
34
1.92
37711--37739
15
1.9
15
100
0
58
68
0
0
31
0.89
38507--38962
43
10.8
43
85
4
615
41
25
10
22
1.85
38507--38962
84
5.4
84
92
1
727
41
25
10
22
1.85
39075--39109
2
17.5
2
93
0
61
51
2
0
45
1.16

Tables:   1

The End!