Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013099.1 Corchorus olitorius cultivar O-4 contig13132, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13423

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--673
32
21.3
32
83
9
850
35
15
27
20
1.94
1--673
125
5.3
125
86
8
938
35
15
27
20
1.94
2160--2189
11
2.7
11
100
0
60
23
20
20
36
1.95
2590--2621
12
2.7
12
100
0
64
53
31
15
0
1.43
2664--2736
36
2.1
36
94
2
130
17
10
27
43
1.83
7110--7257
31
4.8
31
89
0
206
35
26
22
16
1.95
7147--7276
31
4.2
31
86
2
109
36
24
22
16
1.95
9761--9842
29
2.9
28
81
1
92
36
12
12
39
1.80
10135--10170
4
9.2
4
87
6
56
25
0
0
75
0.81
13067--13096
8
3.9
8
95
4
53
90
0
10
0
0.47

Tables:   1

The End!