Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013100.1 Corchorus olitorius cultivar O-4 contig13133, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17545

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
338--407
36
1.9
36
88
0
104
21
8
8
61
1.52
1172--1218
25
1.9
24
95
4
85
55
8
6
29
1.55
1209--1289
39
2.0
40
92
2
137
37
3
8
50
1.51
1835--1914
29
2.7
30
88
3
117
30
20
10
40
1.85
2889--2913
13
1.9
13
100
0
50
24
20
0
56
1.43
5504--5531
2
14.0
2
100
0
56
50
0
0
50
1.00
5919--5961
21
2.0
21
86
8
61
46
25
11
16
1.80
5983--6020
6
6.2
6
87
6
58
15
0
0
84
0.63
5981--6020
19
2.1
19
90
4
62
15
0
0
85
0.61
9170--9246
36
2.1
36
85
4
102
33
16
14
35
1.89
9142--9313
87
2.0
88
83
5
224
31
16
13
38
1.87
12540--12564
13
1.9
13
100
0
50
24
36
16
24
1.94
15295--15837
141
3.9
140
90
2
858
28
20
15
35
1.93
15295--15837
279
1.9
280
90
2
876
28
20
15
35
1.93
15939--16583
40
16.6
39
81
8
502
30
21
10
37
1.87
16084--16140
27
2.1
27
90
0
87
33
19
10
36
1.86
16111--16578
80
5.8
80
86
2
627
31
20
10
37
1.86
16111--16578
120
3.9
120
86
3
629
31
20
10
37
1.86
16111--16578
160
2.9
160
92
1
724
31
20
10
37
1.86
16569--16627
27
2.2
27
85
11
77
25
22
11
40
1.88
16596--16680
39
2.2
40
87
6
120
28
22
11
37
1.89
16610--16697
40
2.2
39
84
9
108
27
21
14
36
1.93

Tables:   1

The End!