Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013103.1 Corchorus olitorius cultivar O-4 contig13136, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26955

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1691--1735
21
2.2
21
92
4
74
68
13
11
6
1.37
5823--5886
27
2.4
27
86
0
83
40
26
17
15
1.89
5915--6347
232
1.9
232
100
0
866
31
21
18
28
1.97
6960--7362
222
1.8
222
92
2
693
42
12
23
21
1.86
13946--14273
43
7.8
41
84
9
430
42
25
10
21
1.84
13946--14273
167
2.0
168
95
0
595
42
25
10
21
1.84
13946--14273
84
3.9
84
94
0
577
42
25
10
21
1.84
14382--14415
2
17.5
2
87
6
52
47
2
0
50
1.16
16875--16907
2
16.5
2
100
0
66
48
0
0
51
1.00
19911--20725
408
2.0
407
96
0
1506
34
16
19
29
1.94
22229--22348
15
8.5
15
69
21
71
50
15
0
34
1.45
22234--22365
41
3.2
41
95
0
228
49
16
0
34
1.46
22247--22301
26
2.1
26
83
6
67
50
16
0
32
1.45
22288--22342
26
2.1
26
83
6
67
50
16
0
32
1.45
22930--22971
21
2.0
21
100
0
84
19
19
28
33
1.96
25455--25535
33
2.5
33
87
4
110
24
7
22
45
1.77

Tables:   1

The End!