Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013105.1 Corchorus olitorius cultivar O-4 contig13138, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26829

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
426--497
31
2.3
31
75
17
78
26
4
8
61
1.43
769--810
12
3.6
12
74
6
50
28
47
19
4
1.69
764--811
23
2.1
23
92
0
78
33
43
16
6
1.73
770--826
23
2.5
23
88
2
80
31
45
17
5
1.71
800--936
16
8.6
16
91
4
215
38
40
15
5
1.71
1514--1566
3
17.7
3
100
0
106
33
0
0
66
0.92
6610--6711
23
4.5
23
85
6
120
37
16
8
37
1.80
6756--6967
88
2.4
88
93
0
343
36
13
9
40
1.77
6305--6987
22
31.3
22
70
12
234
35
15
9
39
1.80
7093--7463
22
16.7
21
69
14
137
33
17
9
39
1.82
7481--7704
22
10.0
22
71
14
156
37
18
9
33
1.83
7472--7704
66
3.5
66
83
6
272
37
18
9
34
1.83
7468--7700
44
5.2
43
75
8
191
36
18
9
35
1.83
9263--9324
29
2.1
30
82
8
74
46
12
9
30
1.74
11443--11483
2
20.5
2
100
0
82
48
0
0
51
1.00
16537--16684
73
2.0
73
100
0
296
22
25
13
38
1.91
16903--17092
106
1.8
107
86
3
278
40
11
10
37
1.76
22761--22790
2
15.5
2
93
6
53
50
50
0
0
1.00
24736--24859
63
2.0
63
100
0
248
29
11
17
41
1.84

Tables:   1

The End!