Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013106.1 Corchorus olitorius cultivar O-4 contig13139, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3849
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.32


Found at i:806 original size:17 final size:16

Alignment explanation


    Indices: 786--830  Score: 58
    Period size: 15  Copynumber: 2.9  Consensus size: 16

        776 ATAAAAAATA

                         *   
        786 AAAAAAGAGAAAAGGAG
          1 AAAAAAGAGAAAAAG-G

                            
        803 AAAAAAG-GAAAAAGG
          1 AAAAAAGAGAAAAAGG

                          
        818 AAAAAAGA-AAAAA
          1 AAAAAAGAGAAAAA

        831 AATAAATTAA


Statistics
Matches: 26,  Mismatches: 1, Indels: 4
        0.84            0.03        0.13

Matches are distributed among these distances:
  15   13  0.50
  16    6  0.23
  17    7  0.27

ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00


Consensus pattern (16 bp):   
AAAAAAGAGAAAAAGG
Done.