Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013114.1 Corchorus olitorius cultivar O-4 contig13147, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4406
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38


Found at i:2740 original size:11 final size:12

Alignment explanation


    Indices: 2715--2744  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

       2705 GAATGTTACC

                        
       2715 AAATTTAATGCA
          1 AAATTTAATGCA

                      * 
       2727 AAATTTAATGAA
          1 AAATTTAATGCA

                  
       2739 AAATTT
          1 AAATTT

       2745 CAATATAGTA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.53, C:0.03, G:0.07, T:0.37


Consensus pattern (12 bp):   
AAATTTAATGCA
Done.