Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013115.1 Corchorus olitorius cultivar O-4 contig13148, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75545

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2454--2511
22
2.7
21
78
7
71
34
3
12
50
1.57
2455--2486
10
2.8
12
81
18
50
34
0
15
50
1.45
10061--10514
40
10.7
40
79
10
381
17
27
19
35
1.94
9912--10457
86
6.3
87
83
6
559
18
28
17
35
1.94
9914--10437
133
4.0
135
79
13
401
18
27
18
35
1.94
9918--10457
173
3.1
172
82
10
649
18
28
17
35
1.94
11397--11432
4
9.0
4
93
0
63
25
2
0
72
0.98
15061--15221
40
3.6
44
80
10
177
18
24
19
37
1.94
15103--15341
40
5.8
40
77
9
187
18
26
19
35
1.95
16240--16279
4
10.0
4
100
0
80
25
0
0
75
0.81
20327--20366
18
2.2
19
86
4
55
65
7
0
27
1.20
21584--21676
35
2.6
35
77
6
89
55
9
2
32
1.44
21608--21668
18
3.4
18
78
15
65
52
9
1
36
1.45
21927--21972
19
2.4
19
76
23
51
50
0
0
50
1.00
26378--26449
3
24.0
3
71
5
56
4
37
2
55
1.34
31114--31153
2
20.5
2
84
5
55
52
0
0
47
1.00
32326--32416
45
2.0
44
95
2
164
27
16
9
46
1.79
32562--32597
18
2.0
18
100
0
72
44
5
5
44
1.50
32566--32617
16
3.1
16
86
5
59
30
5
9
53
1.57
32603--32661
11
5.4
11
83
0
73
25
3
10
61
1.44
32603--32663
22
2.8
22
92
0
104
24
4
9
60
1.48
32580--32652
22
2.9
26
68
19
64
28
5
9
56
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34469--34494
3
8.7
3
100
0
52
30
0
34
34
1.58
35076--35232
14
11.3
14
87
1
199
8
9
19
61
1.53
35210--36405
304
3.9
304
96
0
2189
21
13
21
42
1.87
42390--42436
2
23.5
2
100
0
94
51
48
0
0
1.00
42436--42460
2
12.5
2
100
0
50
52
0
0
48
1.00
43526--43599
32
2.3
32
97
0
139
40
10
39
9
1.73
45313--45337
2
12.5
2
100
0
50
48
52
0
0
1.00
46186--46223
18
2.1
19
90
5
60
28
13
39
18
1.88
57851--58179
43
7.8
42
83
8
427
41
26
10
21
1.86
57851--58181
84
3.9
84
94
2
567
41
25
10
22
1.86
58288--58338
2
25.5
2
87
0
75
49
5
0
45
1.26
65544--65574
15
2.1
14
94
5
53
54
19
6
19
1.65

Tables:   1

The End!