Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013117.1 Corchorus olitorius cultivar O-4 contig13150, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76483

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6368--6486
37
3.3
37
85
14
176
36
15
7
39
1.76
6371--6472
32
3.0
32
92
7
159
36
16
6
40
1.76
8355--8443
45
2.0
44
93
2
151
42
15
19
22
1.88
11839--11872
2
17.5
2
87
6
52
52
2
44
0
1.16
16588--16644
21
2.9
19
82
10
78
38
8
15
36
1.79
18900--18983
45
1.9
44
90
4
134
54
9
1
34
1.40
23186--23221
2
18.0
2
100
0
72
50
0
0
50
1.00
32758--32802
7
6.4
7
81
0
54
82
0
8
8
0.85
32758--32802
21
2.1
21
91
0
72
82
0
8
8
0.85
34009--34389
193
2.0
193
96
0
708
28
14
9
47
1.75
34828--34874
21
2.2
21
81
7
51
36
10
4
48
1.57
35150--35292
3
48.0
3
93
4
236
65
0
0
34
0.98
43828--43859
6
5.3
6
100
0
64
31
0
31
37
1.58
45896--45930
14
2.5
14
100
0
70
20
25
37
17
1.94
45943--45976
16
2.3
15
90
10
52
23
0
0
76
0.79
55503--55550
22
2.2
22
84
0
60
16
25
39
18
1.91
76262--76344
38
2.2
38
97
0
157
27
18
24
30
1.98

Tables:   1

The End!