Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013122.1 Corchorus olitorius cultivar O-4 contig13155, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111844

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4472--4518
22
2.1
22
84
7
60
61
2
12
23
1.42
4396--4577
92
2.0
92
90
3
287
52
2
12
32
1.50
4613--4674
31
2.0
31
93
0
106
43
1
20
33
1.62
7112--7164
23
2.3
23
93
3
88
47
20
9
22
1.79
8519--8567
25
1.9
25
87
4
71
44
2
0
53
1.12
11664--11704
21
2.0
21
85
9
57
34
29
21
14
1.93
16970--17061
30
3.1
30
96
0
166
39
23
20
16
1.92
17749--17943
97
2.0
97
97
0
372
23
15
15
44
1.85
19563--19728
69
2.4
69
96
0
314
41
13
13
30
1.84
19683--19759
39
2.0
39
89
0
118
44
10
10
35
1.73
26051--26311
30
8.6
30
91
0
378
30
19
19
29
1.97
28206--28240
16
2.2
16
90
5
54
57
2
0
40
1.14
28584--28665
18
4.2
20
69
28
54
50
0
2
47
1.14
30855--30931
2
42.5
2
71
23
55
50
1
2
45
1.23
30853--30933
12
7.1
12
71
13
64
50
1
2
45
1.22
35647--35738
45
2.1
42
86
7
123
34
6
20
38
1.79
44303--44373
25
2.8
25
97
0
133
22
5
39
32
1.77
44727--44756
2
15.0
2
100
0
60
50
0
0
50
1.00
44866--45045
65
2.7
68
90
6
275
39
6
12
41
1.68
50892--50972
42
1.9
42
87
0
117
38
16
20
24
1.92
52685--52739
28
2.0
28
81
0
65
27
10
5
56
1.56
57977--58012
16
2.2
16
95
0
63
36
2
27
33
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58029--58068
19
2.1
19
95
0
71
27
12
15
45
1.82
65396--65422
4
6.8
4
100
0
54
22
0
77
0
0.76
70375--70402
14
2.0
14
100
0
56
21
14
35
28
1.92
72180--72223
23
2.0
22
86
4
61
47
0
47
4
1.22
96465--96561
41
2.4
42
84
8
128
38
25
3
32
1.72
96483--96567
41
2.1
41
95
0
152
41
27
3
28
1.72
100313--100338
7
3.7
7
100
0
52
61
15
23
0
1.33
107210--107264
17
3.2
17
82
10
67
23
21
18
36
1.95
110144--110205
22
2.6
24
78
19
60
56
17
12
12
1.67

Tables:   1

The End!