Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001313.1 Corchorus olitorius cultivar O-4 contig01313, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 654

Length: 1091
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25


Found at i:496 original size:13 final size:13

Alignment explanation


    Indices: 454--498  Score: 56
    Period size: 12  Copynumber: 3.5  Consensus size: 13

        444 TCATGCACCC

                        * 
        454 AAAACAATTTATTT
          1 AAAACAATTTA-AT

                 *       
        468 AAAACCATTT-AT
          1 AAAACAATTTAAT

                         
        480 AAAACAATTTAAT
          1 AAAACAATTTAAT

                  
        493 AAAACA
          1 AAAACA

        499 GTAATAAAAT


Statistics
Matches: 27,  Mismatches: 3, Indels: 3
        0.82            0.09        0.09

Matches are distributed among these distances:
  12   10  0.37
  13    8  0.30
  14    9  0.33

ACGTcount: A:0.58, C:0.11, G:0.00, T:0.31


Consensus pattern (13 bp):   
AAAACAATTTAAT
Done.