Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013130.1 Corchorus olitorius cultivar O-4 contig13163, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 914

Length: 1524
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32


Found at i:701 original size:29 final size:28

Alignment explanation


    Indices: 656--731  Score: 93
    Period size: 29  Copynumber: 2.6  Consensus size: 28

        646 GGTATTACAA

                                        
        656 AAATTGTTATAGTTTGGGAAATAAGTTT
          1 AAATTGTTATAGTTTGGGAAATAAGTTT

                                             
        684 AAATATGTTATA-TATTGGGAAATAAGTTTTCT
          1 AAAT-TGTTATAGT-TTGGGAAATAAG--TT-T

                             
        716 AAATT-TTATAGTTTGG
          1 AAATTGTTATAGTTTGG

        732 TAAAAAATCT


Statistics
Matches: 42,  Mismatches: 0, Indels: 10
        0.81            0.00        0.19

Matches are distributed among these distances:
  28    5  0.12
  29   19  0.45
  30    9  0.21
  31    4  0.10
  32    5  0.12

ACGTcount: A:0.36, C:0.01, G:0.18, T:0.45


Consensus pattern (28 bp):   
AAATTGTTATAGTTTGGGAAATAAGTTT
Done.