Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013131.1 Corchorus olitorius cultivar O-4 contig13164, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27710

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
557--608
22
2.4
22
100
0
104
32
23
15
28
1.95
1455--1530
29
2.6
29
82
15
95
35
1
19
43
1.60
10699--10727
15
1.9
15
100
0
58
72
0
27
0
0.85
10904--11009
41
2.6
42
86
3
144
28
13
11
47
1.77
14629--14664
15
2.5
15
90
4
56
38
8
13
38
1.75
14629--14678
14
3.5
14
89
8
66
40
8
14
38
1.75
17595--17922
67
4.9
67
91
2
507
37
13
22
26
1.91
17592--18249
64
10.0
66
86
3
483
37
13
22
26
1.92
18340--18605
50
5.3
50
93
0
435
37
12
25
24
1.90
18582--18665
26
3.2
26
73
9
89
36
11
26
25
1.90
24302--24338
15
2.5
15
90
0
56
62
21
0
16
1.33

Tables:   1

The End!