Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013132.1 Corchorus olitorius cultivar O-4 contig13165, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2781
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38


Found at i:864 original size:15 final size:15

Alignment explanation


    Indices: 844--873  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        834 GTATGAATTC

                           
        844 AAAATTGATTTTTGA
          1 AAAATTGATTTTTGA

                   *       
        859 AAAATTGGTTTTTGA
          1 AAAATTGATTTTTGA

        874 TTAACTTACA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.37, C:0.00, G:0.17, T:0.47


Consensus pattern (15 bp):   
AAAATTGATTTTTGA
Done.