Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013134.1 Corchorus olitorius cultivar O-4 contig13167, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6612
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.31


Found at i:424 original size:21 final size:21

Alignment explanation


    Indices: 398--438  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        388 TTGAAGCCCT

                                  
        398 ATTGGAGAC-AAGTGGTACTAA
          1 ATTGGA-ACTAAGTGGTACTAA

                  *             
        419 ATTGGATCTAAGTGGTACTA
          1 ATTGGAACTAAGTGGTACTA

        439 GGGTTTTCAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  20    1  0.06
  21   17  0.94

ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29


Consensus pattern (21 bp):   
ATTGGAACTAAGTGGTACTAA

Found at i:2368 original size:21 final size:21

Alignment explanation


    Indices: 2342--2382  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2332 TTGAAGCCCT

                                  
       2342 ATTGGAGAC-AAGTGGTACTAA
          1 ATTGGA-ACTAAGTGGTACTAA

                  *             
       2363 ATTGGATCTAAGTGGTACTA
          1 ATTGGAACTAAGTGGTACTA

       2383 GGGTTTTCAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  20    1  0.06
  21   17  0.94

ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29


Consensus pattern (21 bp):   
ATTGGAACTAAGTGGTACTAA
Done.