Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013136.1 Corchorus olitorius cultivar O-4 contig13169, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30707

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3368--3396
10
2.9
10
100
0
58
27
0
41
31
1.56
5724--5772
21
2.3
21
82
0
62
20
22
40
16
1.91
9387--9426
15
2.6
16
88
4
55
62
12
10
15
1.54
10235--10263
10
2.9
10
100
0
58
27
0
41
31
1.56
11878--11919
15
2.7
15
92
3
66
64
14
9
11
1.50
18406--18433
13
2.2
13
100
0
56
0
14
0
85
0.59
21107--21182
27
2.8
27
89
0
107
36
23
19
19
1.95
23930--24094
56
3.0
56
83
2
208
21
13
22
41
1.89
26236--26274
1
39.0
1
100
0
78
100
0
0
0
0.00
30569--30612
21
2.1
21
82
0
52
43
4
9
43
1.56

Tables:   1

The End!