Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013137.1 Corchorus olitorius cultivar O-4 contig13170, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31464

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1184--1293
38
2.9
38
87
2
150
37
14
13
34
1.86
1280--1339
21
2.8
21
82
7
59
46
5
3
45
1.41
1784--1842
22
2.7
22
84
7
68
45
1
5
47
1.34
9374--9423
25
2.0
25
96
0
91
36
18
32
14
1.90
10165--10220
2
27.5
2
85
10
78
1
1
44
51
1.22
11278--11351
32
2.3
32
84
11
91
8
14
36
40
1.76
11278--11350
16
4.6
16
72
14
62
8
15
35
41
1.77
11856--11903
21
2.2
21
85
10
62
58
4
2
35
1.29
12365--12401
6
6.2
6
100
0
74
0
32
48
18
1.49
12408--12447
16
2.5
16
87
0
62
10
12
40
37
1.77
13016--13090
37
2.0
37
100
0
150
33
8
13
45
1.72
15009--15058
20
2.5
21
80
9
59
72
2
8
18
1.19
15859--16151
96
2.9
96
78
14
290
40
7
10
41
1.69
15951--16178
105
2.2
104
88
3
323
40
7
9
42
1.66
16875--16941
21
3.2
21
64
19
59
32
17
13
35
1.89
16827--16967
41
3.5
41
95
0
248
37
16
12
34
1.85
25037--25085
24
2.0
25
84
4
64
40
6
12
40
1.67
27947--27987
21
2.0
21
85
0
55
17
51
24
7
1.70

Tables:   1

The End!