Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01013141.1 Corchorus olitorius cultivar O-4 contig13174, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2461
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30


Found at i:2203 original size:21 final size:20

Alignment explanation


    Indices: 2179--2268  Score: 108
    Period size: 21  Copynumber: 4.3  Consensus size: 20

       2169 TAAGCAATTA

                    *  *         
       2179 CAATGAGCATGAAACATTCTC
          1 CAATGAGCTTGGAAC-TTCTC

                                 
       2200 CAATGAGCTTGGAACCTTCTC
          1 CAATGAGCTTGGAA-CTTCTC

                *          *     
       2221 CAATAAGCTTGGAACCTCTTC
          1 CAATGAGCTTGGAACTTC-TC

                                 
       2242 CAATGAGCTTGGAACTTACTC
          1 CAATGAGCTTGGAACTT-CTC

                  
       2263 CAATGA
          1 CAATGA

       2269 TCTCCTAGCA


Statistics
Matches: 60,  Mismatches: 6, Indels: 6
        0.83            0.08        0.08

Matches are distributed among these distances:
  20    3  0.05
  21   55  0.92
  22    2  0.03

ACGTcount: A:0.31, C:0.26, G:0.17, T:0.27


Consensus pattern (20 bp):   
CAATGAGCTTGGAACTTCTC
Done.