Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013143.1 Corchorus olitorius cultivar O-4 contig13176, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76444

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
530--600
21
3.4
21
94
3
117
26
26
18
28
1.98
12589--12619
2
15.5
2
100
0
62
51
0
48
0
1.00
13067--13096
12
2.6
11
90
10
51
0
0
10
90
0.47
15505--15599
42
2.3
42
88
0
145
38
17
2
41
1.62
25719--25763
15
3.0
15
90
0
63
6
17
33
42
1.76
25719--25760
5
8.4
5
86
0
57
4
19
33
42
1.72
41272--41486
110
2.0
110
94
0
376
30
11
17
40
1.85
45424--45494
31
2.3
31
80
7
81
22
23
5
47
1.72
49795--49827
14
2.4
14
94
0
57
66
6
15
12
1.42
49954--50153
75
2.7
75
84
0
238
41
14
23
20
1.89
50598--50655
2
29.0
2
100
0
116
0
50
0
50
1.00
51727--52209
74
6.4
74
83
7
623
40
23
12
23
1.88
51625--52209
148
3.8
147
85
7
631
42
22
11
23
1.86
51984--52262
53
5.3
53
69
10
232
42
23
10
24
1.84
51949--52253
156
2.0
156
92
1
504
40
22
11
24
1.87
52105--52398
127
2.2
130
82
6
326
41
22
11
24
1.87
52193--52356
74
2.1
77
83
9
203
42
24
12
21
1.87
52246--52298
21
2.5
21
84
6
72
41
26
15
16
1.88
52269--52401
58
2.3
59
82
6
148
42
21
12
23
1.86
52288--52486
89
2.2
92
84
8
255
42
21
11
25
1.85
52471--52514
21
2.1
21
95
0
79
38
20
9
31
1.84
53554--53602
24
2.0
25
92
4
82
46
8
4
40
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53658--53801
72
2.0
72
93
2
245
42
9
27
20
1.82
61397--61437
2
20.5
2
85
9
57
48
4
0
46
1.23
67821--67908
41
2.1
41
87
0
122
39
14
12
32
1.84

Tables:   1

The End!