genome.fa.s13144.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013144.1 Corchorus olitorius cultivar O-4 contig13177, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45800

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2032--2078	21	2.3	21	78	10	53	34	0	2	63	1.06
5636--5671	19	1.9	18	88	5	54	41	8	22	27	1.82
5624--5683	30	2.0	30	83	6	77	41	8	18	31	1.80
8040--8075	19	1.9	18	88	5	54	41	8	22	27	1.82
8028--8087	30	2.0	30	83	6	77	41	8	18	31	1.80
12403--12455	29	1.9	28	82	17	67	49	9	11	30	1.70
12454--12532	27	2.9	27	92	0	122	37	20	20	21	1.94
12455--12546	27	3.4	27	86	3	78	38	22	18	20	1.94
16293--16331	11	3.5	11	82	0	51	33	0	12	53	1.39
22424--22450	14	1.9	14	100	0	54	44	0	7	48	1.31
26447--26493	23	2.0	23	95	0	85	31	17	23	27	1.96
28062--28155	32	3.2	32	63	25	87	23	6	11	58	1.56
28063--28178	57	2.0	57	100	0	232	24	6	12	56	1.59
28202--28241	21	2.1	19	86	13	55	20	27	15	37	1.92
29486--29525	21	2.1	19	86	13	55	40	15	25	20	1.90
33572--33665	35	2.7	34	80	8	100	28	12	19	39	1.88
38355--38503	75	2.0	75	89	2	228	39	8	20	30	1.83
38913--38942	15	1.9	16	93	6	53	80	0	16	3	0.85
39724--39786	22	3.1	22	78	13	73	71	0	14	14	1.15
39748--39777	13	2.2	14	94	5	53	73	0	13	13	1.10
40066--40164	50	2.0	50	91	0	162	32	16	15	36	1.89
40509--40547	16	2.2	19	86	13	57	51	12	23	12	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40572--40851	127	2.2	126	94	0	479	30	22	14	32	1.94
40961--41534	68	8.5	68	86	4	793	25	28	19	26	1.98
40997--41494	269	1.9	269	91	2	831	25	28	18	26	1.98
41548--41612	28	2.8	21	70	27	58	36	16	9	36	1.81
41632--41708	38	2.1	37	90	7	122	31	19	18	31	1.96
41718--41791	35	2.2	32	81	13	87	20	24	12	43	1.86
44497--44563	24	2.9	22	77	14	64	7	5	19	67	1.37
45134--45273	33	4.1	33	80	7	145	29	15	16	39	1.89
45198--45266	35	1.9	37	91	5	115	31	11	14	42	1.82

Tables:   1

The End!