Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013145.1 Corchorus olitorius cultivar O-4 contig13178, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11066

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--282
68
4.1
68
91
0
449
26
29
19
24
1.98
415--504
39
2.5
35
79
13
117
32
18
15
33
1.93
428--516
39
2.3
39
92
1
144
35
14
15
33
1.88
2873--2914
21
2.0
22
90
4
68
23
28
11
35
1.91
5358--5413
15
3.9
13
82
13
58
75
8
1
14
1.13
5364--5413
16
3.2
16
85
2
66
78
8
2
12
1.05
5355--5413
29
2.0
30
90
6
93
74
8
3
13
1.17
5394--5423
13
2.2
14
94
5
53
73
13
0
13
1.10
5393--5439
19
2.5
18
80
10
58
70
12
2
14
1.26
6092--6238
50
2.9
50
95
0
267
31
17
12
37
1.88
6648--6864
91
2.4
91
93
0
362
28
19
13
38
1.90
7040--7274
50
4.7
50
91
2
373
32
12
26
28
1.92
7040--7274
101
2.3
101
91
2
375
32
12
26
28
1.92

Tables:   1

The End!