Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013146.1 Corchorus olitorius cultivar O-4 contig13179, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25426

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3401--3510
38
2.9
38
81
0
148
13
10
17
58
1.63
3433--3506
13
5.7
13
73
12
62
10
12
18
58
1.63
3494--3543
27
1.9
25
88
8
73
14
10
14
62
1.55
3528--3557
13
2.3
13
100
0
60
13
13
6
66
1.43
3519--3595
32
2.4
33
93
2
129
15
11
11
61
1.58
7853--7893
9
4.8
9
76
11
50
43
0
0
56
0.99
9126--9411
41
6.8
42
79
12
304
41
26
10
20
1.85
9126--9411
84
3.4
85
90
2
427
41
26
10
20
1.85
9126--9403
43
6.6
42
81
8
300
42
27
9
21
1.83
12206--13337
72
15.8
72
88
1
1599
21
25
19
33
1.97
13982--14021
17
2.4
17
87
4
55
30
27
25
17
1.97
16646--16924
41
6.7
41
79
8
294
41
26
9
22
1.84
16646--16924
84
3.3
85
89
3
422
41
26
9
22
1.84
16646--16924
43
6.6
42
80
8
291
41
26
9
22
1.84
21205--21262
10
6.4
9
74
21
50
10
10
3
75
1.15
21211--21248
16
2.3
17
86
4
51
7
7
2
81
0.96
21778--21853
36
2.1
37
97
2
145
25
15
28
30
1.96
23705--23758
19
2.6
21
77
19
60
38
18
3
38
1.69
24599--24636
20
1.9
20
84
10
51
36
13
5
44
1.66
24857--24950
29
3.4
28
75
8
93
21
14
25
38
1.92

Tables:   1

The End!