Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01013147.1 Corchorus olitorius cultivar O-4 contig13180, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7017

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2002--2062
29
2.1
29
100
0
122
31
16
22
29
1.96
2137--2210
32
2.2
34
85
4
98
51
4
24
20
1.64
2869--3106
120
2.0
120
92
1
397
28
18
15
36
1.92
3657--3689
2
16.5
2
100
0
66
51
0
0
48
1.00
4799--5127
172
1.9
172
87
3
484
45
8
11
34
1.71
4971--5482
142
3.7
138
78
9
546
44
9
11
34
1.73
5212--5461
131
1.9
127
84
3
329
44
12
10
32
1.76
5346--5829
166
2.9
166
91
1
754
44
10
10
34
1.73
5750--6014
80
3.3
79
68
15
220
44
11
9
35
1.73

Tables:   1

The End!