Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001315.1 Corchorus olitorius cultivar O-4 contig01315, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 643

Length: 1073
ACGTcount: A:0.27, C:0.13, G:0.19, T:0.41

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:550 original size:61 final size:61

Alignment explanation


    Indices: 474--681  Score: 226
    Period size: 66  Copynumber: 3.3  Consensus size: 61

        464 AAATTTGATA

                                               *                         
        474 TTGGGCCTTATGGGTTTCTTTTTGAATTTGGGCTTCAATATGTTATACATTTGTTTTGTTG
          1 TTGGGCCTTATGGGTTTCTTTTTGAATTTGGGCTTAAATATGTTATACATTTGTTTTGTTG

                   *                                    *       *            
        535 TTGGGCCATATGGGTTTCTTTTTAATTTGAATTTGGGCTTAAATTTGTTATATATTTGTTTTGTT
          1 TTGGGCCTTATGGGTTTC---TT--TTTGAATTTGGGCTTAAATATGTTATACATTTGTTTTGTT

             
        600 G
         61 G

                                        *               **   *              
        601 TTGGGCCTTATGGGTTTC-TTTT-ATATGTGGGCTTAAACT-TGCAATATA-TTGTTTGTGTTG
          1 TTGGGCCTTATGGGTTTCTTTTTGA-ATTTGGGCTTAAA-TATGTTATACATTTGTTT-TGTTG

                           *     
        661 ATTGGGCCTTATGGGCTTCTT
          1 -TTGGGCCTTATGGGTTTCTT

        682 GTGCTTTGGG


Statistics
Matches: 128,  Mismatches: 9, Indels: 19
        0.82            0.06        0.12

Matches are distributed among these distances:
  59    7  0.05
  60   27  0.21
  61   35  0.27
  62    2  0.02
  64    2  0.02
  66   55  0.43

ACGTcount: A:0.16, C:0.10, G:0.24, T:0.51


Consensus pattern (61 bp):   
TTGGGCCTTATGGGTTTCTTTTTGAATTTGGGCTTAAATATGTTATACATTTGTTTTGTTG

Done.